An Assessment of Applicability of SNP Chip Developed for Domestic Goats in Genetic Studies of Caucasian Tur (Capra caucasica)

نویسندگان

چکیده

Caucasian tur (Capra caucasica) is native to Greater Caucasus Mountain Chain from Azerbaijan and Georgia in the East Krasnodar region of Russia West. This species divided into two subspecies (by some authors species)—East-Caucasian West-Caucasian a subpopulation referred as Mid-Caucasian tur. Up date most genetic studies are based on mitochondrial DNA sequences comprehensive investigation nuclear required for clarification its diversity population structure. In our work, we assessed applicability Illumina Goat SNP50 BeadChip Total 15 specimens Capra caucasica including East-Caucasian Dagestan (E_TUR, n = 5), Karachay-Cherkessia (W_TUR, Kabardino-Balkaria (M_TUR, 5) were genotyped. After quality control, 5544 polymorphic loci, which distributed all over 29 autosomes, detected. The lowest number SNPs was found 25th chromosome—68, highest 1st chromosome—348. It shown that three groups clustered separately. A total 2061 common populations, 594 only W_TUR, 689 E_TUR, 530 M_TUR. Individual heterozygosity ranged 0.273 0.282 0.217 0.253 0.255 0.283 clinal pattern variation revealed. suggested consider single with several ecotypes. Thus, study demonstrated developed domestic goats can be used useful tool

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ژورنال

عنوان ژورنال: Diversity

سال: 2021

ISSN: ['1424-2818']

DOI: https://doi.org/10.3390/d13070312